Difference between revisions of "Lars Notes"

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Latest revision as of 23:42, 1 January 2017

Limiting number of slots on cluster

The best solution I've come up with to limiting the number of slots assigned to long-running jobs on the cluster is denying access to nodes for the project involved. So, as of now, handalign is denied access on half the cluster nodes. Is there a better way to do this with share policies? It seems there's a better (or at least less confusing) option in SGE 6.1, 'Flexible Resource Quotas', but unfortunately we're running 6.0r3. Should think about upgrading at some point.

Random Notes

  • Burning ISOs from the command line on OS X, seems to be less cranky than disk utility: hdiutil burn youriso.iso

Clustering via matrix powering

http://portal.acm.org/citation.cfm?id=1055579

Promising clustering algorithm

http://genome.cshlp.org/content/9/11/1106.full

-- Lars Barquist - 28 Apr 2008