Virus Evolution

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Virus Evolution: selected topics

Virus biology and evolution.

  1. Viral Regulation. Use Stem Loc, a comparative RNA structure finder, to find secondary structure elements in virus genomes.
  2. Viral Phylogeny. Use Handel to explore viral alignments and phylogenies.
  3. Viral Mutation Rates. Use xrate to measure substitution rates of virus genomes.
  4. Viral Recombination. Use Fearnhead Donnelly to measure recombination rates.

Transposons and their evolution.

    1. Transposon Annotation
    2. Transposon Evolution
    3. Transposon Population Genetics
    4. Fruitfly Transposons

-- Ian Holmes - 26 Jan 2006