Transposon Papers

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Selected Transposon Papers

Transposon Annotation

Transposon detection and clustering algorithms

  • Bejerano et al.: Into the heart of darkness: large-scale clustering of human non-coding DNA. Bioinformatics 2004;20 Suppl 1:i40-8.
    • Start with a graph whose nodes are all putative transposons & edges correspond to BLAST matches
    • Apply the following heuristic to break up this graph:
      • Split any node whose set of neighbors can be partitioned into two dissimilar subsets
      • Iterate, reducing graph to a set of densely-connected subgraphs

Repeats, copy languages and computational linguistics

Transposon Evolution

Transposons and their hosts

Transposons catalyzing evolution

Transposon Phylogeny

Transposon Population Genetics

Transposon population dynamics

This section is clearly in dire need of some extra entries........ please feel free to add something... anything.... all you need is the pubmed ID... Ian Holmes, 26 Feb 06

Fruitfly Transposons

Transposons in Drosophila