Transducer Projects
From Biowiki
Transducer Projects
- Testing & benchmarking of Handel
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Standalone code (derived from tkfalign, etc.) to calculate posterior probability Weight Matrix for any node in a tree - Put together several test alignment datasets from Balibase
- Figure out how to use Gerton Lunter's hmmoc compiler (see e.g. Naila Mimouni's MSc project report) for profile-profile alignment
- Calculate multiway string transducer compositions for test alignments; build hmmoc XML files
- Calculate multiway-transducer scores for weightmatrix profiles using hmmoc
- Calculate multiway-transducer scores for weightmatrix profiles using handalign
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-- Ian Holmes - 07 Nov 2006
