Sim Genome

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SimGenome

SimGenome is a simulator for syntenic genomic blocks, built using SIMGRAM and GSIMULATOR.

Installation

Installation instructions:

  1. Install DART (see downloading DART).
  2. Install GSIMULATOR.

Once installed, run the script [DartPerl:simgenome.pl dart/perl/simgenome.pl]

You can also browse the underlying grammar: [DartGrammar:simgenome.eg dart/grammar/simgenome.eg]

Example usage

Example usage:

./dart/bin/simgenome
 tmp/simgenome-tree.newick
 >tmp/simgenome-output.stock

Related software

-- Ian Holmes - 13 Apr 2008