Knudsen Hein

Knudsen-Hein algorithm for predicting structure of aligned RNA sequences

Knudsen & Hein: RNA secondary structure prediction using stochastic context-free grammars and evolutionary history. Bioinformatics 1999;15:446-54.

See also:

• Knudsen & Hein: Pfold: RNA secondary structure prediction using stochastic context-free grammars. Nucleic Acids Res. 2003;31:3423-8.

Implementations:

• PFOLD program
  • PFOLD server
• Xfold Program, available in DART