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Topics in TWiki web: Changed: now 20:36 GMT Changed by:
WebStatistics 16 Mar 2010 - 13:10 - r1.479 TWikiGuest
// Oct 2009 25970 12 0 3064 2729 TWikiDocumentation 1686 801 TWikiPreferences 779 713 ImageGalleryPlugin 700 642 TWikiVariablesNtoZ 497 392 TWikiTemplates 381 WebStatistics 9 Main.TWikiGuest 3 Main.IanHolmes // Nov 2009 17386 1 0 1374 1124 WelcomeGuest 553 470 TWikiVariables 405 359 ImageGalleryPlugin 300 295 AdminTools 291 291 WebStatistics 291 TWikiRegistration 1 Main.TWikiGuest // Dec 2009 24759 0 0 3706 2872 TWikiDocumentation 1218 1092 TWikiPreferences ...  
InterWikis 09 Feb 2010 - 17:29 - r1.111 IanHolmes
// Inter-Wiki Link Rules (or Links to other Sites) // This topic lists all aliases needed to map Inter-Site links to external wikis/sites. // Whenever you write ExternalSite:Page it will be linked automatically to the page on the external site. The link points to the URL corresponding to the ExternalSite alias below, concatenated to the Page you choose. Example: Type Wiki:RecentChanges to get Wiki:RecentChanges, the RecentChanges page at the original Wiki site ...  
NewTopic 27 Nov 2009 - 14:35 - NEW TWikiGuest
// All best Downloads! //  
MyCoolNew 02 Sep 2009 - 16:53 - NEW TWikiGuest
// Main.TWikiGuest 02 Sep 2009 // Hey guys, // This is a fake email that I am writing for my homework assignment, so I can familiarize myself with bioWiki. Wiki Words are interesting. //  
TestPage17 02 Sep 2009 - 16:52 - NEW TWikiGuest
// Main.TWikiGuest 02 Sep 2009 // This is MyCoolNew topic //  
WebSiteMap_Fall08 21 Aug 2009 - 15:10 - NEW TWikiGuest
Web NameDescription //  
KoalaSkinWebList 21 Aug 2009 - 14:59 - r1.86 IanHolmes
// List of all Webs // For the TWiki.KoalaSkin // Note If you change this page, dont forget to run // INSTALL/bin/koalaskin-generate afterwards for your settings to take effect // Alternatively, you may click on this link: // Regenerate templates // to commit your changes. // Set ALLOWTOPICCHANGE TWikiAdminGroup // Set ALLOWTOPICRENAME TWikiAdminGroup // Guidelines //  
TWikiTutorial 04 Aug 2009 - 15:40 - r1.18 TWikiGuest
// # 20-Minute TWiki Tutorial // This step-by-step, hands-on tutorial gets you up to speed with all the TWikiSite basics, in mere minutes ... // 1. Get set... // Open two browser windows, so that you can follow these steps in one window, while trying things out in the other. // 2. Take a quick tour... // A TWikiSite is divided into webs; each one usually represents one area of collaboration. You can navigate the webs from the upper right corner of each web page ...  
WindowsInstallSummary 02 Aug 2009 - 23:46 - r1.2 TWikiGuest
// Nutshell Summary of Windows Install Cookbook // This summary of WindowsInstallCookbook is for you if: // You've already installed TWiki on Windows before and want a quick refresher of the important points. // You've never installed TWiki on Windows before, but find the WindowsInstallCookbook too much to swallow right now. It is recommended you read through this summary to build a picture of the overall process, and then use the full cookbook as your guide ...  
CommentPlugin 27 Mar 2009 - 10:56 - r1.20 IanHolmes
// Comment Plugin // This plugin allows users to quickly post comments to a page without an edit/preview/save cycle. // ( Discussion in TWiki:Plugins/CommentPluginDev ) // Features // Inserts an edit box into the page that allows users to type in and save comments. Comments can be made // in different formats (as defined by a template), // in both forward and reverse chronological order, // signed or unsigned, dated or undated (as defined by a template), // ...  
WebHome 20 Mar 2009 - 20:11 - r1.157 IanHolmes
// All wikis hosted on biowiki.org are powered by TWiki: an open-source, flexible, powerful, secure, yet simple web-based collaboration platform. Use TWiki to run a project development space, a document management system, a knowledge base or any other groupware tool on either an intranet or on the Internet. // This is the place to learn about TWiki features, find where to download it, and try it out for yourself... // The official TWikiTM site is http://twiki ...  
WebLeftBar 20 Mar 2009 - 20:11 - r1.3 IanHolmes
//  
TWikiPreferences 03 Mar 2009 - 11:45 - r1.171 IanHolmes
// Site-Level Preferences // The following are site-level settings that affect all users in all webs on this TWikiSite. They can be selectively overwritten on the individual web level (see in each web), topic level (the topic being rendered), and on the user level (create preferences in your user account topic in the web, ex: ). // X NOTE: You can lock individual settings at the site or web levels using User Group Access Control see section below. // Biowiki ...  
CommentsTmpl 23 Oct 2008 - 09:02 - r1.3 IanHolmes
// Templates for CommentPlugin See .CommentPlugin#Customisation for help // WARNING: THIS FILE WILL BE OVERWRITTEN WHEN YOU UPGRADE THE COMMENT PLUGIN // Put your local templates into Trash.UserTemplates2. // LOCAL TEMPLATES WILL OVERRIDE TEMPLATES DEFINED IN THIS FILE // Template definitions // Templates used in rest of file // Generic prompt box used by other templates //  
WebSiteMap_Blog 04 Oct 2008 - 21:05 - NEW Main.root
Web NameDescription //  
WebSiteMap_Fall07 04 Oct 2008 - 21:05 - NEW Main.root
Web NameDescription //  
WebSiteMap_Fly 04 Oct 2008 - 21:05 - NEW Main.root
Web NameDescription //  
WebSiteMap_Research 04 Oct 2008 - 21:05 - NEW Main.root
Web NameDescription // Main // The main biowiki web // JBrowse // Developing the next generation genome browser // TWiki // Configuration //  
WebSiteMap_Teaching 04 Oct 2008 - 21:05 - NEW Main.root
Web NameDescription // Fall09 // Fall 2009 teaching // Sandbox // The biowiki sandbox //  
SessionPlugin 01 Oct 2008 - 17:38 - r1.4 IanHolmes
// Session Plugin (Version 2.992) // Development discussions in TWiki:Plugins/SessionPluginDev // Description // What this plugin does with sessions is that it encapsulates all "logon memory" within the session. Once a user authenticates, their session contains their username and will use that username on all pages regardless of if they are authenticated pages or non-authenticated pages. This is a major improvement over the other mechanisms as it is nearly entirely ...  
WebTopicViewTemplate 16 Sep 2008 - 14:20 - r1.24 IanHolmes
// Page '' not found in web // Perhaps you meant one of the following? // INCLUDINGTOPIC " limit "16" scope "topic" web "all" nosearch "on" nototal "on" format " $topic in the $web web$n" } // Make sure you spelled the .WikiWord correctly. Remember, a WikiWord is case sensitive. // It's also possible that you've been accidentally misdirected to the wrong web (this is the web). // If you would like to search for similar topics: // Search for similar topics in ...  
WebTopicNonWikiTemplate 15 Sep 2008 - 16:46 - r1.8 IanHolmes
// Page '' not found // Perhaps you meant one of the following? // TOPIC " limit "16" scope "topic" nosearch "on" nototal "on" format " $topic $n" } // Make sure you spelled the .WikiWord correctly. Remember, a WikiWord is case sensitive. // If you would like to search for similar topics: // Search for similar topics in this web // Search for similar topics in all webs // Use the Search link on top of this page, or do a simple //  
TWikiVariables 29 Aug 2008 - 17:21 - r1.79 IanHolmes
// # TWiki Variables // Special text strings expand on the fly to display user data or system info // TWikiVariables are text strings VARIABLE that expand into content whenever a page is rendered for viewing. VARIABLES are replaced by data, either user-entered or automatically generated by TWiki (like the date, or the current username). There are predefined variables, and Preference variables that you can configure. You can also define custom variables, with ...  
TWikiRegistration 04 Dec 2007 - 05:12 - r1.20 TWikiGuest
// IMPORTANT NOTE: if you are a student in one of the classes used by this web (Main.BioE131 or Main.BioE241), then please register using the .StudentRegistration page instead of this one. That way, your home page will be in the web with all the other student home pages, and your name will appear on the .TWikiUsers page in that web. Helps keep things tidy... // To register as a new user, simply fill out this form: // First last name: // 'a') (ch 'A') (ch // ...  
AnonChanges 28 Nov 2007 - 12:17 - r1.6 IanHolmes
// MAINWEB " revuser "Main.TWikiGuest" regex "on" nosearch "on" order "modified" reverse "on" limit "20"} // TWIKIWEB " revuser "Main.TWikiGuest" regex "on" nosearch "on" order "modified" reverse "on" limit "10"} // TEACHINGWEB " revuser "Main.TWikiGuest" regex "on" nosearch "on" order "modified" reverse "on" limit "10"} //  
WebChanges 12 Aug 2007 - 13:39 - r1.4 IanHolmes
// INCLUDINGWEB " regex "on" nosearch "on" order "modified" reverse "on" limit "50"} // See 100, 200, 400, 800 most recent changes // See all changes //  
WebSiteMap 29 Jun 2007 - 11:16 - NEW IanHolmes
Web NameDescription // Research // Research webs // Main // The main biowiki web // JBrowse // Developing the next generation genome browser //  
TouchGraphPlugin 07 Jun 2007 - 10:47 - r1.6 TWikiGuest
// // #1082; #1077; #1088; #1082; #1077; #1088; #1077; #1085; #1088; #1077; #1085; #1088; #1077; #1085; // This plugin is based on TWiki:Plugins/TouchGraphAddOn // . Instead of a standalone java app with its own HTML browser, provides a popup window containing an applet. // fffff // Advantages: // no need to install anything but a Java Runtime on the clients. // interacts with standard, full featured browsers instead of Java HTML component. // Syntax Rules ...  
RecentRecent 05 Mar 2007 - 17:23 - r1.4 IanHolmes
// Recent new pages // URLPARAM{"search" default ". " } " web "INCLUDINGWEB " } " regex "on" nosearch "on" order "created" reverse "on" limit "" } // See 100, 200, 400, 800 most recent new pages // See all pages // Recent changes // URLPARAM{"search" default ". " } " web "INCLUDINGWEB " } " regex "on" nosearch "on" order "modified" reverse "on" limit "" } // See 100, 200, 400, 800 most recent changes // See all changes //  
WebTopBar 18 Nov 2006 - 19:59 - r1.17 IanHolmes
//  
WelcomeGuest 04 Apr 2006 - 04:13 - r1.34 IanHolmes
//  
ThreadedDiscussionPlugin 13 Feb 2006 - 11:36 - r1.8 IanHolmes
// // Generates a threaded discussion. Each discussion point can be edited // individually, and discussion points can be commented on individually. // Syntax Rules // DISCUSSION Variable // Place the variable DISCUSSION{...} before any bullet list. // Supported parameters: // "(list #124;thread)" Rendering style for discussion, see STYLE preference: list formats the discussion as a bullet list; the level of discussion is indicated by the indentation and the ...  
WikiName 08 Nov 2005 - 20:12 - r1.4 IanHolmes
// Your name, usually your first and last name connected without a space. // For example, Tim Berners-Lee's WikiName is TWiki.TimBernersLee. // Note that in this Main.BioWiki, a space is added by TWiki.SpacedWikiWordPlugin // unless you prefix the WikiWord with the name of the web followed by a period. // For example, "TimBernersLee" expands to TimBernersLee, but "TWiki.TimBernersLee" expands to TWiki.TimBernersLee. // X Your name is also a potentially valid ...  
WebTopicEditTemplate 20 Jul 2005 - 23:04 - r1.6 TWikiGuest
// //  
UnlockTopic 26 Aug 2004 - 22:45 - r1.7 PeterThoeny
// Topics get locked for some time (default is one hour) whenever a user edits, previews or saves a topic. This is to prevent simultaneous topic updates. There is a lock warning if another user tries to edit a topic while the lock is still on. // It is worth noting that all topic changes you do within the lock time will go into the same revision. In other words, if you find a mistake immediately after saving the topic, then TWiki will pretend that it never happened ...  
TWikiTopics 15 Aug 2004 - 22:06 - r1.17 PeterThoeny
// TWiki Topics // The basic building block of a TWiki site is called a topic , identified by a unique, hopefully descriptive, .WikiWord title. It may seem easier just to call them pages, but specifically a topic is the content of a page. The distinction seems small but will become more important as your skill using TWiki increases. TWikiSites are built using topics. // Characteristics // A TWiki topic is a rich information unit. Each topic has: // name // instantly ...  
WindowsInstallCookbook 15 Aug 2004 - 22:04 - r1.6 PeterThoeny
// # Windows Install Cookbook // Introduction // This cookbook is intended to get you up and running with TWiki on Windows quickly, with as few problems as possible. The 'cookbook' approach is simply to restrict the many choices that someone installing TWiki must make, so that a reasonably well-defined procedure can be followed new users can simply follow the steps, while experts can use this as more of a guideline. // NOTE : This cookbook is not 100 complete ...  
WikiReferences 15 Aug 2004 - 19:22 - r1.3 PeterThoeny
// References on Wiki and Collaboration // Some useful articles and books around collaboration and the Wiki technology in particular. // Wiki Technology and TWiki // Book: The Wiki Way, Quick Collaboration on the Web; by Bo Leuf and Ward Cunningham; Addison-Wesley Pub Co; ISBN:020171499X // Presentation: Wiki, a Shared Blog for the Corporate World; by Peter Thoeny; !LinuxWorld; 05 Aug 2004; http://TWiki.org/cgi-bin/view/Codev/TWikiPresentation05Aug2004 // Article ...  
WikiWikiClones 15 Aug 2004 - 15:47 - r1.6 PeterThoeny
// TWiki is a Wiki Wiki clone and has its root in JOS Wiki. // TWiki's home is at http://TWiki.org/ // TWiki takes a lot of ideas from Ward Cunningham's remarkable Wiki Wiki Web invention // A list of Wiki Wiki clones can be found at http://c2.com/cgi/wiki?WikiWikiClones //  
WikiTopic 15 Aug 2004 - 15:46 - r1.4 PeterThoeny
// A !WikiTopic is one unit of information in a T/Wiki web. It is more or less a universal term in the world of Wikis. Each !WikiTopic is displayed as one Web page in your browser. While debate swirls in high circles of TWiki development as to whether a topic should simply be called a page , there is a good case for the distinction: // a WikiTopic has a distinct WikiWord title that defines it; a Web page doesn't // a topic's content is self-contained, doesn ...  
WikiCulture 15 Aug 2004 - 15:40 - r1.9 PeterThoeny
// FAQ: // Everybody can edit any page, this is scary. Doesn't that lead to chaos? // Answer: // is one of many WikiWikiClones, the first one was built by Ward Cunningham. Collaborating the Wiki way is different from other collaboration tools like Usenet. A distinct Wiki culture forms around these tools: // Any and all information can be deleted by anyone. Wiki pages represent nothing but discussion and consensus because it's much easier to delete flames, spam ...  
WhatIsWikiWiki 15 Aug 2004 - 15:40 - r1.4 PeterThoeny
// FAQ: // So what is this WikiWiki thing exactly? // Answer: // A set of pages of information that are open and free for anyone to edit as they wish. They are stored in a server and managed using some software. The system creates cross-reference hyperlinks between pages automatically. See WelcomeGuest and TWikiSite for more information. // Back to: TWikiFAQ // TWiki:Main.PeterThoeny 26 Nov 2000 //  
WebSiteTools 15 Aug 2004 - 15:33 - r1.5 PeterThoeny
// Web Site Tools // (More options in WebSearch) // WebChanges: Display recent changes to the web // WebIndex: List all topics in alphabetical order. See also the faster WebTopicList // : Subscribe to an e-mail alert sent when something changes in the web // : View access statistics of the web // : Preferences of the web ( has site-wide preferences) // // The list above provides the TWikiSiteTools used to navigate, search and maintain a particular web. It is ...  
YouAreHere 15 Aug 2004 - 14:48 - r1.3 PeterThoeny
// You are currently in the web. The color code for this web is this background, so you know where you are. // If you are not familiar with the collaboration platform, please visit .WelcomeGuest first. // // The description above briefly explains how a background color corresponds to a particular web. It is included within other topics using the following directive: // INCLUDE{" TWIKIWEB .YouAreHere"} // List all topics which include this topic. //  
TimBernersLee 15 Aug 2004 - 14:43 - r1.3 PeterThoeny
// Tim Berners-Lee invented the World Wide Web while working at CERN in 1989. See his biography at http://www.w3.org/People/Berners-Lee/ // TWiki:Main.PeterThoeny 12 Jan 2003 //  
TextFormattingFAQ 15 Aug 2004 - 14:42 - r1.17 PeterThoeny
// Text Formatting FAQ // The most frequently asked questions about text formatting are answered. Also, TextFormattingRules contains the complete TWiki shorthand system on one quick reference page. // // How do I make a separator? // Create a separator a horizontal rule by entering three dashes at the beginning of a blank line: . You can enter more than three if you like, for a more visible separator in edit mode: // // // How do I create a heading? //  
TextEditor 15 Aug 2004 - 14:38 - r1.2 PeterThoeny
// Text Editor // A text editor, or text processor, handles plain text only, different from a word processor because it doesn't do display formatting like bold type, or mixed font styles, sizes and colors. Advanced text editors are typically used by computer programmers, and have text manipulation features not found or regularly used in word processors, like regular expression search and replace, clip libraries, bookmarks to tag individual lines, upfront display ...  
TemplateWeb 15 Aug 2004 - 14:37 - r1.3 PeterThoeny
// Template Web // Purpose // Template webs were created to act as templates in creating webs. It is now possible to creation webs via the .ManagingWebs topic. In the not so distant past TWiki webs were created by hand. The data directory contains the different webs such as Main and TWiki . A web that begins with an underscore character is considered invisible and a template. All files in the default (or any other web that begins with an underscore) template ...  
TWikiDocumentation 15 Aug 2004 - 01:15 - r1.46 PeterThoeny
// TWiki Reference Manual () // This page contains all documentation topics as one long, complete reference sheet. // Doubleclick anywhere to return to the top of the page. // Note if you are reading this at twiki.org, then you are reading about the most recent code under development. // If you want to read about the features on your local TWiki, then you should read the documentation there! //  
TWikiVariablesNtoZ 14 Aug 2004 - 00:54 - NEW PeterThoeny
// Note: This topic is included by TWikiVariables // // #VarNOTIFYTOPIC // NOTIFYTOPIC name of the notify topic // Syntax: NOTIFYTOPIC // Expands to: , renders as Related: #VarHOMETOPIC HOMETOPIC, STATISTICSTOPIC, TOPIC // #VarPLUGINVERSION // PLUGINVERSION the version of the TWiki Plugin API // This is the $TWiki::Plugins::VERSION number, also indicating the version of the TWikiFuncModule // Syntax: PLUGINVERSION{} //  

Number of topics: 50

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