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Finite-state machines for sequence analysis

Pattern-matching

MCB binding site

DirectedGraphPlugin_1.png diagram

Pairwise alignment

Needleman-Wunsch

DirectedGraphPlugin_2.png diagram

Smith-Waterman

DirectedGraphPlugin_3.png diagram

Gotoh

DirectedGraphPlugin_4.png diagram

-- IanHolmes - 21 Nov 2007

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