Genome Browser Link Rules

This topic lists aliases that can be mapped pages and subsequence coordinate to external wikis and sequence browsers.

Shorthands of the form ExternalSite:Name/Start-End are auto-expanded.

Wishlist: I think what we really want is a (slightly) more generic pattern-expansion definition language here. The "Alias" column in the table below should read Fly:$name/$start-$end, Worm:$name/$start-$end etc. IH 2/17/07

How to define subsequence coordinate links

• Subsequence coordinate links are defined in the tables below.
• Each entry must be of format:
  | External site alias | URL | Tooltip help text |.
• If the URL and Tooltip Text contain $name, $start or $end, then these get expanded to the sequence name, start and end coords. If there is no $name, then the name is appended to the URL.
• Note: The Tooltip Text must not contain any HTML tags (including <nop> escape code), no internal WikiWord links, and no external links. Hint: Escape 'WikiWords', '$name', '$start' and '$end'.

General subseq coord Links

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