How to use generate-tiles.pl

TODO: write me!

Until then, run:

./generate-tiles.pl -?

to get a help prompt.

Sample use (ancient history?)

./generate-tiles.pl -c /mnt/nfs/avu/yeast_chr1/conf/ -o /tmp/temp/ --no-xml -m 3 --print-tile-nums --exit-early -l I

./generate-tiles.pl -c /mnt/nfs/avu/yeast_chr1/conf/ -o /tmp/temp/ -h http://web.server.url/ -m 0 --print-tile-nums -r t1z10r1-2 -l I

You also need to run generate-tiles.pl once more, in mode 3 (-m 3), to generate the XML file with the track/zoom level config info for the client.

[11/02/2006 AVU] Filling database with primitives on harmony (ancient history)

Make sure you have permissions to write to the database unhindered.

Create the database:

cat /home/avu/Generic-Genome-Browser/ajax/server/gdtile.sql | mysql

Test things are working, but do nothing:

/home/avu/Generic-Genome-Browser/ajax/server//generate-tiles.pl -c /usr/local/conf/gbrowse.conf/ -s yeast_chr1 -m 1 -v 1 --exit-early --print-tile-nums --no-xml --render-gridlines -l I

Now actually do the fill.

/home/avu/Generic-Genome-Browser/ajax/server//generate-tiles.pl -c /usr/local/conf/gbrowse.conf/ -s yeast_chr1 -m 1 -v 1 --no-xml --render-gridlines -l I

[11/09/2006 AVU] Filling database with primitives on xander (ancient history)

Same as above, except:

generate-tiles.pl -c /home/avu/gbrowse/yeast_chr1/conf -s yeast_chr1 -m 1 -v 1 --exit-early --print-tile-nums --no-xml --render-gridlines -l I

and

generate-tiles.pl -c /home/avu/gbrowse/yeast_chr1/conf -s yeast_chr1 -m 1 -v 1 --no-xml --render-gridlines -l I

[11/14/2006 AVU] Filling database with primitives on sinclair, our new webserver (should also work on other SixtyFourBitCluster nodes)

Same as above, except:

generate-tiles.pl -c /etc/httpd/conf/gbrowse.conf/ -s yeast_chr1 -m 1 -v 1 --exit-early --print-tile-nums --no-xml --render-gridlines -l I

and

generate-tiles.pl -c /etc/httpd/conf/gbrowse.conf/ -s yeast_chr1 -m 1 -v 1 --no-xml --render-gridlines -l I

Created by AndrewUzilov on 03 Mar 2006