• Rambaud Drummond Pybus coolness -- HIV substitution rate predicts disease - IanHolmes - 16 Feb 2007 06:18:40
• Stephen Salzberg on genome wikis - IanHolmes - 13 Feb 2007 21:07:15
• Indelign: ML inference of evolutionary indel histories for a given multiple alignment - IanHolmes - 12 Feb 2007 04:35:41
• Challenges in Engineering Microbes for Biofuel Production (Science sustainable energy issue) - IanHolmes - 09 Feb 2007 10:13:35
• A post by Raph Koster on 40 ways to be a better game designer - IanHolmes - 04 Feb 2007 02:38:04
• Emily Short (IF icon) reviews Raph Koster's "A Theory of Fun for Game Design" - IanHolmes - 03 Feb 2007 10:42:23
• Nature Progress: Empirical fitness landscapes reveal accessible evolutionary paths. - IanHolmes - 03 Feb 2007 02:59:27
• How to cheat at everything - IanHolmes - 03 Feb 2007 02:58:21
• Brief review by Jeff Gordon et al on the human microbiome - IanHolmes - 02 Feb 2007 01:39:28
• Coevolution in two-species biofilms - IanHolmes - 01 Feb 2007 00:53:50
• Silent SNPs can affect protein folding, via translation kinetics - IanHolmes - 26 Jan 2007 23:26:37
• Recombination & the nature of bacterial speciation - IanHolmes - 26 Jan 2007 23:25:34
• Virus in fungus in plant: three-way symbiosis - IanHolmes - 26 Jan 2007 23:08:15
• Linden Labs releases Second Life source code under GPL! Prepare for virtual economy take-off - IanHolmes - 09 Jan 2007 10:30:39
• Fish'n'steps exercise videogame: walk 5 miles, see fish grow plump - IanHolmes - 05 Jan 2007 12:44:13
• CCC23 on Google video: can't wait to watch Joi Ito's WoW management talk - IanHolmes - 04 Jan 2007 02:54:54
• Crazy boingboing fungus links - IanHolmes - 04 Jan 2007 02:50:54
• LANL: random polygraphs and drug testing. It's getting rough out there - IanHolmes - 02 Jan 2007 04:55:53
• Geo-locating a PC by inferring its temperature from its clock skew -- beautiful piece of passive reconnaissance... - IanHolmes - 01 Jan 2007 05:36:43
• George Danezis' Introduction to Traffic Analysis (PDF) - IanHolmes - 01 Jan 2007 05:35:00
• Top Ten Indie Games of 2006 - IanHolmes - 01 Jan 2007 05:11:29
• Yep, the Google honeymoon is well & truly over - IanHolmes - 30 Dec 2006 05:26:51
• The Numbers Stations: spycraft hiding in plain sight - IanHolmes - 30 Dec 2006 05:23:49
• NG: malaria genome evolution - IanHolmes - 29 Dec 2006 06:42:59
• Nature Genetics microRNA supplement including "lifecycle of an miRNA" animation - IanHolmes - 29 Dec 2006 06:42:42
• Maybe Jimmy Wales is onto something with his Open Search Engine ideas. This is what happens when there's a proprietary monopoly on searching the net... - IanHolmes - 28 Dec 2006 11:32:45

• Working jetpack! (more like paragliding than the classic Speccy game, though) - IanHolmes - 26 Dec 2006 04:55:20
• History of computer RPGs @ armchair arcade - IanHolmes - 26 Dec 2006 04:52:16
• Try telling the Lohacarans that global warming's overhyped - IanHolmes - 26 Dec 2006 04:51:37
• A few "best of 2006" lists: Mac screensavers, Web OS's, applications - IanHolmes - 26 Dec 2006 04:49:06
• Runners-up to Science Breakthrough of the Year include paleogenomics, speciation genetics, memory and LTP and piwi-RNAs - IanHolmes - 22 Dec 2006 04:10:33
• Metagenomics: archaea in acid mines - IanHolmes - 22 Dec 2006 04:07:34
• Brenner, Venter et al: comparison of human & shark reveals conserved noncoding elements - IanHolmes - 22 Dec 2006 04:06:06
• Issue #2 of Rudy Rucker's scifi zine, Flurb - IanHolmes - 21 Dec 2006 16:01:44
• NIH launches 'database of Genotype and Phenotype' - IanHolmes - 20 Dec 2006 20:02:07
• Nature's 2006 gallery -- amazing! - IanHolmes - 20 Dec 2006 20:01:41
• "How Africa learned to love the cow": evolution of lactase persistence - IanHolmes - 20 Dec 2006 20:01:16
• Human gut ecology & obesity - IanHolmes - 20 Dec 2006 20:00:18
• Temple Grandin documentary video - IanHolmes - 19 Dec 2006 08:54:14
• Some WWI/2 crypto links: German cryptanalysis on the Western Front, Intelligence War in the European Theater (Ultra etc), "Codebreaking in WW1/2" by Kahn, Crypto Docs in the Navy Department Library - IanHolmes - 18 Dec 2006 07:27:58
• NASA images of Victorian bush fires - IanHolmes - 15 Dec 2006 03:28:15
• Ideas for next year's BioE131: InformationBiology, CryptanalysisExercises, NucleicAcidEngineering - IanHolmes - 14 Dec 2006 06:27:01
• Berkeley Marketplace funds student projects (via bb) - IanHolmes - 14 Dec 2006 04:10:24
• Haussler, Miller, Blanchette et al on ancestral genome reconstruction in this month's GR - IanHolmes - 10 Dec 2006 04:07:57
• Engineering yeast for biofuels - IanHolmes - 08 Dec 2006 08:51:55
• DNA logic circuits using only strand displacement (no enzymatic activity, as with previous work) - IanHolmes - 08 Dec 2006 08:51:01
• Websites are games; there's water on Mars; she's not a witch (links via bb) - IanHolmes - 08 Dec 2006 00:41:38
• Short & sweet derivation of Ito's Lemma - IanHolmes - 06 Dec 2006 08:09:15
• Movie: DNA reptating around a hexagonal grid (Science subscription required) - IanHolmes - 06 Dec 2006 07:58:22
• Samoilov and Arkin on noise-induced bifurcations & the like: "Deviant effects in molecular reaction pathways" - IanHolmes - 06 Dec 2006 07:57:23
• Magnetite in human nose! - IanHolmes - 02 Dec 2006 20:23:41
• Jennifer Doudna: HCV IRES, RNP ELISAs, P-element KH domains, chem.biol. review, Dicer, RNA reconnaissance, more - IanHolmes - 02 Dec 2006 09:19:05
• Skool Daze walkthru (links to more here) - IanHolmes - 01 Dec 2006 22:01:57
• Microarray webinar for biowiki.tv: differential gene expression in malaria - IanHolmes - 30 Nov 2006 21:13:03

• Project Cybercell and the virtual membrane of discrete automata (thanks P.Shing Ho @ F1000)
• Dragonfly: AJAX multiple alignment viewer, Yi Zhang et al - IanHolmes - 26 Nov 2006 19:56:19
• Wearable fruitfly farm(?!) - IanHolmes - 25 Nov 2006 16:07:16
• Thanksgiving TV: Heroes; Monkey; Jacobus; Alchemists of Sound - IanHolmes - 24 Nov 2006 20:53:20
• Neural encoding paper from 1998 by Bialek et al (Spikes!) - IanHolmes - 20 Nov 2006 22:07:44

• Riesenmaschine (whose Powerpoint Karaoke resembles the star turn at Genome Informatics) have a charming altar to everyday hacker gods, as reported by N.F.T.B.

• Medical Ethics Wiki - IanHolmes - 17 Nov 2006 17:15:13
• A Classified Wikipedia - IanHolmes - 16 Nov 2006 08:33:19

• Sean Eddy recommends Spikes (buy), a polemic review of neural computation in terms of information theory and statistical decision theory.

• Good Experience Games: Mark Hurst's list of free, quality online games - IanHolmes - 15 Nov 2006 19:10:52
• VideoGameWorkout links: exercise bike workstation; Tetris weightlifting - IanHolmes - 15 Nov 2006 17:53:35
• Microsoft job interview: Wasting the Prince of Darkness - IanHolmes - 13 Nov 2006 17:46:37

• Salon: Bully is "biting satire" - IanHolmes - 11 Nov 2006 21:13:30
• "Wargames 2: The Dead Code". Seriously. Ripley is the new Joshua, apparently

• OpenMoko: 100% open Linux phone, GPS, touchscreen...
  • The Inquirer on why this is cool; Linux Devices has techy details

• JGI in the environment:
  • Comparative genomics of the lactic acid bacteria
  • Metagenomics of sludge(!) True geeks find this k3wl
  • Sulphur-redox symbionts of a marine worm

• Vertebrate genomics from Ed Rubin et al:
  • Accelerated Evolution of Conserved Noncoding Sequences in Humans (c.f. Human-Accelerated Regions)
  • Two rounds of whole genome duplication in the ancestral vertebrate (from 2005)

• Compbio paper trawl (BMC, PLoS)
  • Arkin et al on phylogenomics of histidine kinase signalling in bacteria
  • Moses, Eisen, Pollard et al on TF binding site turnover in Drosophila
  • Rob Knight et al on detecting horizontal gene transfer using irreversible substitution models
  • Sean Eddy and Robin Dowell on pair SCFGs for RNA

• Honeybee genome web focus
  • honeybee genome paper in Nature: it's transposon-poor, AT-rich...
  • honeybee issue of Genome Research
    • phylogenomics roots bees & wasps at base of insects
    • Protobee: phylo-clustering the bee proteome
  • while contemplating all this, don't forget LANL's bomb-sniffing bees and DARPA's insect cyborgs

• That paper by Heidmann et al, reconstructing a viable ancestor of HERV1
  • celebrated, or (maybe) lamented, by William Gibson on his blog...
• Genome Research article on community annotation - IanHolmes - 07 Nov 2006 19:59:17
• BaMBA: Biology and Mathematics in the Bay Area - IanHolmes - 04 Nov 2006 21:17:14
• Photos of The Black Hole, Los Alamos (thanks boingboing). The site itself is here... more links on the goog. I go there every time I visit LANL... possibly the coolest junkyard in the world. - IanHolmes - 25 Oct 2006 05:04:38

• More rule-based interactive fiction with Storytron (c.f. Inform 7) - IanHolmes - 15 Oct 2006 19:20:40
• Dangerously seductive: Ajax domain-name registration - IanHolmes - 14 Oct 2006 23:06:36
• Florida judge on Bully: "There's nothing in the game that you wouldn't see on TV every night" - IanHolmes - 14 Oct 2006 21:59:46
• Spirited defense of Rockstar's "Bully" by Clive Thompson at Wired - IanHolmes - 14 Oct 2006 06:47:07
• Spook Country, sequel to William Gibson's Pattern Recognition, is finished! - IanHolmes - 14 Oct 2006 03:27:48
• LOL reviews of the Rand Corporation's book "A Million Random Digits", courtesy Schneier - IanHolmes - 14 Oct 2006 01:56:06

• "Gene Wiki" at the proposal stage - IanHolmes - 12 Oct 2006 20:37:33
• Google Code Search exploits - IanHolmes - 10 Oct 2006 17:53:57
• 8 BIT and blipfestival: the art-ification of the 80's continues - IanHolmes - 06 Oct 2006 20:26:49
• Tavare et al: Estimation in ancestral recombination graphs using Markov chain Monte Carlo - IanHolmes - 05 Oct 2006 04:49:41
• The story of Gizmondo, the Uppsala Mafia, the SGVTA antiterror squad and the wrecked Ferrari Enzo - IanHolmes - 05 Oct 2006 04:02:42

• Lamb et al's "Connectivity Map": cell states defined by RNA expression and small-molecule perturbation - IanHolmes - 04 Oct 2006 15:06:05

• A webserver in 200 lines of C - IanHolmes - 27 Sep 2006 05:46:42
• Biovisions cell movies... - IanHolmes - 26 Sep 2006 00:14:42
• BioSpi - IanHolmes - 22 Sep 2006 17:20:57
• PRISM -- probabilistic model checking - IanHolmes - 22 Sep 2006 17:08:24
• A puzzle in DNA biophysics - IanHolmes - 22 Sep 2006 08:05:33

• Human-Accelerated Regions: ncRNA gene HAR1F, enriched in Cajal-Retzius neurons, found with PhyloGrammars - IanHolmes - 22 Sep 2006 03:22:29

• Upcoming Pirate Movies in Berkeley: Sonic Outlaws (9/27), A High Wind in Jamaica (10/4), Madame X, An Absolute Ruler (10/11) - IanHolmes - 22 Sep 2006 03:07:56

• Ajax programmer job @biowiki.org --- Web Genomics 2.0! please circulate - IanHolmes - 17 Sep 2006 18:06:35

• Trained bomb-bees - IanHolmes - 14 Sep 2006 16:58:21
• The Turing Bombe roars again - IanHolmes - 14 Sep 2006 04:36:18

• WW2 steganography - IanHolmes - 04 Sep 2006 05:07:59
• Moore's Law and Carlson's Curves. Exponential, faster-than-transistors growth of DNA sequencing & synthesis. Biohackery kicks 455! - IanHolmes - 02 Sep 2006 07:46:34
• William Gibson on mirror implants, the playa - IanHolmes - 02 Sep 2006 07:44:41
• Rudy Rucker at Biohackery - IanHolmes - 02 Sep 2006 07:42:53
• Ross Anderson's book "Security Engineering" is available online - IanHolmes - 01 Sep 2006 01:08:24
• This chromatin code stuff is pretty cool... - IanHolmes - 24 Aug 2006 02:41:02
• Holmes lab linguistics-influenced compbio profiled at Berkeley Lab Notes - IanHolmes - 24 Aug 2006 02:40:11
• Stochastic microbial models: bioreactor growth (also this), plankton feeding, chemotaxis (BioE241 prep) - IanHolmes - 21 Aug 2006 23:54:16

• Pirate movie festival in Berkeley, 9/6 to 10/25. This reminds me of Under the Black Flag (ISBN:0156005492), a k3wl pirate history book - IanHolmes - 21 Aug 2006 18:27:31
• HIV: early battles in the gut - IanHolmes - 01 Aug 2006 18:40:34
• Recently added stub pages on string transducers and tree transducers... - IanHolmes - 01 Aug 2006 17:35:59
• Competitive biofeedback relaxation game - IanHolmes - 22 Jul 2006 09:59:07
• Retroviral invasion of the koala genome - IanHolmes - 13 Jul 2006 08:15:31
• Stochastic cellular automata and microbial game theory - IanHolmes - 13 Jul 2006 08:13:37
• Brain-computer interfaces and neuroprosthetic software (N&V, Making the Paper; more links via Boing Boing) - IanHolmes - 13 Jul 2006 07:59:31

• Yi Xing, Chris Lee et al apply EM to a partially observed mixture model of alternate splice-forms - IanHolmes - 12 Jul 2006 05:59:11

• British Goth spot-fined eighty quid for swearing at machine - IanHolmes - 09 Jul 2006 18:27:31
• Steal This Book wiki -- Abbie Hoffman's countercultural survival manual goes live - IanHolmes - 05 Jul 2006 17:13:02
• Some bioenergy links: ethanol from cellulose... JGI's 100'th genome... the DoE pilot bioethanol plant... white rot fungi - IanHolmes - 04 Jul 2006 08:47:34

• Ethical hacking course at University of Abertay - IanHolmes - 21 Jun 2006 03:00:34
• Backstreet magnetic fingertip implants via Boing Boing (whose David Pescovitz also writes Berkeley Lab Notes) - IanHolmes - 09 Jun 2006 07:20:06
• Gill et al, Science: human gut metagenomics (This Week in Science summary; The Scientist has more) - IanHolmes - 05 Jun 2006 00:50:17
• Ace movie on video piracy (wmv, streaming Flash, Flash, streaming wmv; context) - IanHolmes - 03 Jun 2006 02:30:03
• biowiki.org gizoogle - IanHolmes - 18 May 2006 07:46:03

• Sfold, Sribo, etc: tools for RNA folding and rational design - IanHolmes - 24 Apr 2006 19:21:30
• http://www.picotux.com/ .. it's a computer that's the size of a RJ45 socket (tm ottaky) - IanHolmes - 22 Apr 2006 03:10:45
• Currently reading Joshi and Schabes' 1997 review of tree-adjoining grammars - IanHolmes - 21 Apr 2006 22:52:06
  • Schabes, Y. 1994. Left to right parsing of lexicalized tree-adjoining grammars. Computational Intelligence, Vol. 10, No. 4, pp. 506-524. - IanHolmes - 21 Apr 2006 05:35:34
  • Thesis dissertation: "LR parsing for tree adjoining grammars and its application to corpus-based natural language parsing", Carlos Augusto Prolo, U Penn (adviser: Aravind Joshi) - IanHolmes - 21 Apr 2006 05:24:20
• XIN: AJAX desktop - IanHolmes - 20 Apr 2006 06:18:12

• The wiki gangsign - IanHolmes - 12 Apr 2006 06:22:10
• LTR_Struc (Main.PubMed): de novo annotation of LTR retrotransposons - IanHolmes - 10 Apr 2006 18:33:19
• Adaptive evolution of TF binding sites: Laessig et al on information evolution - IanHolmes - 07 Apr 2006 08:06:17
• Fake eggs on April 1st - IanHolmes - 05 Apr 2006 06:25:54
• Autocatalytic DNA depurination - IanHolmes - 04 Apr 2006 20:36:32
• Fruitfly comparative annotation wiki: http://fly.biowiki.org/ - IanHolmes - 04 Apr 2006 12:34:21
• Penchovsky and Breaker's RNA logic from 10/23/2005 - IanHolmes - 04 Apr 2006 11:57:44

• script.aculo.us "ghostly sortable" demo - IanHolmes - 21 Mar 2006 10:14:49
• Open source javascript demos: Rico and script.aculo.us - IanHolmes - 21 Mar 2006 10:08:54
• Open source javascript frameworks: Prototype and Dojo - IanHolmes - 21 Mar 2006 10:03:10
• Chaucerblog and Actionscript Shakespeare - IanHolmes - 21 Mar 2006 09:17:16
• Reg goes analog - IanHolmes - 21 Mar 2006 09:11:38
• Game Developers Conference March 20-24 2006 San Jose CA back in San Francisco next yr - IanHolmes - 21 Mar 2006 08:18:57

• Via Bruce Schneier: article predicting biowar apocalypse, and rebuttal cautioning against anti-tech backlash - IanHolmes - 16 Mar 2006 07:03:35
• Cal basketball: the social engineering play - IanHolmes - 15 Mar 2006 23:46:00
• DARPA solicits proposals for insect cyborgs - IanHolmes - 15 Mar 2006 21:11:39
• Drosophila and bioterror - IanHolmes - 12 Mar 2006 07:12:16
• Extended series of papers on pathogen/immune "infectogenomics" in Cell - IanHolmes - 12 Mar 2006 07:10:03
• Comparative genomics of transposons on Drosophila chromosome 4 - IanHolmes - 12 Mar 2006 07:07:48
• Transposable element clusters in filamentous fungi - IanHolmes - 12 Mar 2006 07:06:16
• Small ORF deletions in yeast - IanHolmes - 12 Mar 2006 07:04:51
• Stability of duplications in yeast - IanHolmes - 12 Mar 2006 07:04:01
• Heritable adaptation of gene regulatory networks - IanHolmes - 12 Mar 2006 07:03:16
• Alternate UTRs and gene regulation - IanHolmes - 12 Mar 2006 06:52:23
• Animal miRNA review in TIG - IanHolmes - 12 Mar 2006 06:51:39
• Recoding in phages - IanHolmes - 12 Mar 2006 06:51:22
• Pairwise/multiple alignment biases in comparative genomics - IanHolmes - 12 Mar 2006 06:50:57
• "Electronic chromosome painting" for palaeogenomics - IanHolmes - 12 Mar 2006 06:50:06
• Bacterial small-molecule signaling pathways - IanHolmes - 12 Mar 2006 06:49:20
• 31-ortholog, 191-species tree of life (ignore these guys) - IanHolmes - 12 Mar 2006 06:48:33
• RNA-RNA interactions in the RNA World: SELEX experiments on RNase P - IanHolmes - 12 Mar 2006 06:46:09
• Correlating mutations: reasonable "only for a handful of families" - IanHolmes - 12 Mar 2006 06:45:02
• Profile of David Baker - IanHolmes - 12 Mar 2006 06:43:17
• 1,000 transcribed human retrogenes - IanHolmes - 12 Mar 2006 06:42:53
• Conflicting agents in the brain -- tell Bob Arctor - IanHolmes - 12 Mar 2006 06:42:14
• miRNAs direct deadenylation of approximate targets - IanHolmes - 12 Mar 2006 06:38:34
• Colorectal miRAGE - IanHolmes - 12 Mar 2006 06:37:05
• Three RNA Cells to Rule them All, Three DNA Viruses to Bind them - IanHolmes - 12 Mar 2006 06:36:21
• Another nitrogen fixer: Rhizobium etli - IanHolmes - 12 Mar 2006 06:35:11
• Computational reconstruction of nitrogen assimilation in Synechococcus - IanHolmes - 12 Mar 2006 06:33:45
• Luz and Vingron compare evolutionary rates of protein families - IanHolmes - 12 Mar 2006 06:31:01
• Plant miRNA duplications - IanHolmes - 12 Mar 2006 06:27:31
• Gelfand et al: alt splicing in flies and mosquitos - IanHolmes - 12 Mar 2006 06:27:09
• Genome Biology minireview of bacterial horizontal transfer and "metabolome shuffling" - IanHolmes - 12 Mar 2006 06:26:41
• Tom Schneider models T7 phages - IanHolmes - 12 Mar 2006 06:24:42
• Malaria: comparative transcriptomics - IanHolmes - 12 Mar 2006 06:21:55
• In vitro evolution of delta ribozyme - IanHolmes - 12 Mar 2006 06:21:18
• Molecular Ecology review: ecological genomics of yeast - IanHolmes - 12 Mar 2006 06:20:36
• Discovery, patent and sequence (from JGI) of a thermophilic biorefinery - IanHolmes - 11 Mar 2006 07:52:23
• Looking forward to Synthetic Biology 2.0 - IanHolmes - 04 Mar 2006 22:48:39
• Prototype of our AJAX interface to GBrowse at http://genome.biowiki.org/ - IanHolmes - 04 Mar 2006 22:48:31
• Copy number for Fcgr3 receptor gene: polymorphisms and lupus - IanHolmes - 26 Feb 2006 03:54:32
• Ecological lateral gene transfer: oceanic proteorhodopsin - IanHolmes - 26 Feb 2006 03:16:40
• Using proteins for computation - IanHolmes - 24 Feb 2006 05:50:54
• 7SL RNA in virions - IanHolmes - 24 Feb 2006 05:49:21
• GeneDesign synthetic gene design platform: artificial Ty1 element - IanHolmes - 23 Feb 2006 23:53:12
• Technocrat article on Tree of Life - IanHolmes - 22 Feb 2006 06:31:14
• Evolving viruses for gene therapy - IanHolmes - 19 Feb 2006 23:15:55
• NIH and disease genomics - IanHolmes - 19 Feb 2006 21:40:53
• Retrovirus meeting: novel attacks on HIV - IanHolmes - 19 Feb 2006 21:40:22
• Rasmus Nielsen on evolution of sex - IanHolmes - 19 Feb 2006 21:39:58
• Palindrome polymorphism and translocations - IanHolmes - 19 Feb 2006 21:39:40
• Picornaviral RNA replication - IanHolmes - 19 Feb 2006 21:39:15
• RNA Ontology Consortium - IanHolmes - 19 Feb 2006 21:38:39
• Number of protein families is increasing over time - IanHolmes - 19 Feb 2006 21:38:26
• Structure-dependent substitution matrices - IanHolmes - 19 Feb 2006 21:37:59
• Multidomain phylogenetic profiles for proteins - IanHolmes - 19 Feb 2006 21:37:30
• Amino acid sequence predicts folding rate - IanHolmes - 19 Feb 2006 21:36:54
• Mammalian MER121 repeats under strong selection - IanHolmes - 19 Feb 2006 21:36:21
• HIV lipid rafts - IanHolmes - 19 Feb 2006 21:35:41
• Detecting overlapping viral ORFs - IanHolmes - 19 Feb 2006 21:35:25
• Variability in eukaryotic gene expression - IanHolmes - 19 Feb 2006 05:22:50
• Fitting a stochastic model to a synthetic E.coli promoter system - IanHolmes - 19 Feb 2006 05:21:12
• Call for gene function wiki - IanHolmes - 18 Feb 2006 18:36:56
• postgenomic.com aggregates highly-cited papers - IanHolmes - 18 Feb 2006 18:35:48
• Slime mould cyborg - IanHolmes - 18 Feb 2006 15:03:34
• Katamari Flash minigame - IanHolmes - 17 Feb 2006 19:33:30

• Michael Ashburner wins 2006 Ben Franklin award - IanHolmes - 16 Feb 2006 20:24:26
• BBC report: biowarfare testing on pacifists - IanHolmes - 16 Feb 2006 20:05:23
• Comparison of metabolic networks - IanHolmes - 16 Feb 2006 20:04:47
• Long, conserved introns in tissue-specific mammalian genes - IanHolmes - 16 Feb 2006 20:04:34
• Sequence analysis and human metagenomics - IanHolmes - 16 Feb 2006 20:03:57
• Survey of programmed mRNA recoding in bacteria - IanHolmes - 16 Feb 2006 20:03:25
• GE prize: how molecular motors move - IanHolmes - 16 Feb 2006 20:02:45
• Gene circuits and evolution of body plans - IanHolmes - 16 Feb 2006 20:02:02
• Short signatures in protein termini - IanHolmes - 16 Feb 2006 20:01:33
• Air travel and epidemics - IanHolmes - 16 Feb 2006 20:01:10
• Retention of duplicate genes in mice - IanHolmes - 16 Feb 2006 20:00:58
• More linguistic phrenology - IanHolmes - 16 Feb 2006 20:00:01
• Engineering cell-electrode communication - IanHolmes - 16 Feb 2006 19:59:50
• Z-DNA and mammalian deletions - IanHolmes - 16 Feb 2006 19:59:15
• RNA degradation in bacteria - IanHolmes - 16 Feb 2006 19:59:03
• RNA modifications and alternate folding - IanHolmes - 16 Feb 2006 19:58:48
• L1 IRESes, translational regulation and retrotransposition - IanHolmes - 16 Feb 2006 19:58:27
• Transcription factor interactions in yeast - IanHolmes - 16 Feb 2006 19:57:22
• Transcription factor proteomics in yeast - IanHolmes - 16 Feb 2006 19:56:55
• Codon-pair bias and tRNA - IanHolmes - 16 Feb 2006 19:54:34
• Philip K Dick robot goes awol - IanHolmes - 16 Feb 2006 16:14:33
• Human rights informatics - IanHolmes - 16 Feb 2006 16:13:22
• Baby math - IanHolmes - 16 Feb 2006 16:12:21
• HIV integrase inhibitors in mouldy sunflowers - IanHolmes - 16 Feb 2006 16:12:04
• Nazi mosquitos - IanHolmes - 16 Feb 2006 16:07:13
• Gene circuits: negative feedback shifts noise to higher frequencies - IanHolmes - 16 Feb 2006 07:36:07
• Two-handed touchscreen: Minority Report without the holograms - IanHolmes - 13 Feb 2006 21:36:21

• miRNA genomics review in TiG - IanHolmes - 08 Feb 2006 06:57:18
• Transposons and evolution: Drosophila's gypsy insulators - IanHolmes - 08 Feb 2006 06:55:38
• Designer zinc fingers in fruitflies - IanHolmes - 08 Feb 2006 06:53:11
• More on methylation profiling - IanHolmes - 08 Feb 2006 06:48:48
• Transposon deserts in mammals - IanHolmes - 08 Feb 2006 06:47:44
• Prokaryotic functional modules - IanHolmes - 08 Feb 2006 06:46:18
• High-throughput DNA methylation profiling - IanHolmes - 08 Feb 2006 06:45:43
• Rarity is an asset: sources of biodiversity in tropical forests - IanHolmes - 08 Feb 2006 06:45:04
• "Where next for genome sequencing?" - IanHolmes - 08 Feb 2006 06:41:48
• Protein design: loop grafting - IanHolmes - 08 Feb 2006 06:41:20
• Plankton metagenomics - IanHolmes - 08 Feb 2006 06:40:28
• Redesigning protein catalysis - IanHolmes - 08 Feb 2006 06:39:00
• Whitaker and bioeng - IanHolmes - 08 Feb 2006 06:37:15
• Nanotoxicity - IanHolmes - 08 Feb 2006 06:36:08
• Stereo odors - IanHolmes - 08 Feb 2006 06:35:15
• Polypharmacology and promiscuous drugs - IanHolmes - 08 Feb 2006 06:33:44
• REDfly: Regulatory Element Database for fruitflies - IanHolmes - 08 Feb 2006 06:31:54
• Spider venom jumped from bacteria - IanHolmes - 08 Feb 2006 06:29:38
• Mobile genomic islands in pathogenic bacteria - IanHolmes - 08 Feb 2006 06:27:19
• mRNA-siRNA binding energy predicts RNAi efficiency - IanHolmes - 08 Feb 2006 06:24:27
• Folding viroids, and other circular RNAs - IanHolmes - 08 Feb 2006 06:22:27
• Termite gut biodiversity varies with age - IanHolmes - 08 Feb 2006 06:18:39
• Antispeciation - IanHolmes - 08 Feb 2006 06:17:13
• Indel bias in popgen - IanHolmes - 08 Feb 2006 06:16:35
• Yeast phosphoproteome - IanHolmes - 08 Feb 2006 06:14:20
• Phylogeographer Godfrey Hewitt wins 2005 Molecular Ecology prize - IanHolmes - 08 Feb 2006 06:13:46
• Bioperl using fink - IanHolmes - 08 Feb 2006 06:09:35
• Noise-driven oscillations in gene circuits - IanHolmes - 06 Feb 2006 17:46:03
• Evolutionary genomics of pathogen recombination - IanHolmes - 01 Feb 2006 00:41:02
• Quasispecies-level virus selection - IanHolmes - 31 Jan 2006 18:13:26
• jayisgames reviews zork and zarf - IanHolmes - 31 Jan 2006 04:06:29
• Greene viral database links ICTV and Genbank - IanHolmes - 31 Jan 2006 04:03:39
• Fighting androids - IanHolmes - 31 Jan 2006 03:56:43
• Experimental approaches to ncRNA verification - IanHolmes - 30 Jan 2006 22:26:15
• LINEs and alpha satellites - IanHolmes - 28 Jan 2006 23:22:56
• tandem chimerism, gene fusion - IanHolmes - 28 Jan 2006 23:19:37
• Genome-wide C.elegans ncRNA survey - IanHolmes - 28 Jan 2006 23:05:50

-- IanHolmes - 05 May 2007