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Inter-Wiki Link Rules (or Links to other Sites)

This topic lists all aliases needed to map Inter-Site links to external wikis/sites.

Whenever you write ExternalSite:Page it will be linked automatically to the page on the external site. The link points to the URL corresponding to the ExternalSite alias below, concatenated to the Page you choose. Example: Type Wiki:RecentChanges to get Wiki:RecentChanges, the RecentChanges page at the original Wiki site.

Biowiki repository & internal links

Alias:Sorted descending URL: Tooltip Text: Name service (optional):
Ticket https://rt.biowiki.org/rt/Ticket/Display.html?id=$page Biowiki Request Tracker ticket #$page
PrismGrammar http://cvs.biowiki.org:8000/viewcvs/prism-grammars/$page?view=markup PRISM grammar repository, file '$page'
JBrowseWikiPub http://jbrowse.org/twiki/pub/$page JBrowse test wiki attachment $page
JBrowseWiki http://jbrowse.org/twiki/bin/view/$page JBrowse test wiki page '$page'
JBrowseSrc https://github.com/jbrowse/jbrowse/tree/master/$page JBrowse repository file 'jbrowse/$page'
JBrowseSite http://jbrowse.org/$page jbrowse.org/$page
DartSrcDir http://github.com/ihh/dart/tree/master/src/$page DART git repository, directory 'dart/src/$page' at github
DartSrc http://github.com/ihh/dart/blob/master/src/$page DART git repository, C++ source file 'dart/src/$page' at github
DartRepositoryDir http://github.com/ihh/dart/tree/master/$page DART git repository, directory 'dart/$page' at github
DartRepository http://github.com/ihh/dart/blob/master/$page DART git repository page for file 'dart/$page' at github
DartPython http://github.com/ihh/dart/blob/master/python/$page DART git repository, Python source file 'dart/python/$page' at github
DartPerlCheckout http://github.com/ihh/dart/blob/master/perl/$page DART git repository, Perl source file 'dart/perl/$page' at github
DartPerl http://github.com/ihh/dart/blob/master/perl/$page DART git repository, Perl source file 'dart/perl/$page' at github
DartGrammar http://github.com/ihh/dart/blob/master/grammars/$page DART git repository, xrate grammar file 'dart/grammars/$page' at github
DartData http://github.com/ihh/dart/blob/master/data/$page DART git repository, file 'dart/data/$page' at github
DartCheckout http://github.com/ihh/dart/raw/master/$page DART git repository, current version of file '$page' at github
BrowserSrc https://github.com/jbrowse/jbrowse/tree/master/js/$page JBrowse Javascript source file 'jbrowse/js/$page'
BiowikiPerl http://cvs.biowiki.org:8000/viewcvs/perl/$page?content-type=text/plain Biowiki Perl CVS repository file '$page'
BiowikiGff https://raw.github.com/ihh/gfftools/master/$page GFF tools github repository file '$page'
BiowikiCvsDir http://cvs.biowiki.org:8000/viewcvs/$page Biowiki CVS repository directory '$page'
BiowikiCvsCheckout http://cvs.biowiki.org:8000/viewcvs/*checkout*/$page Biowiki CVS repository file '$page'
BiowikiCvs http://cvs.biowiki.org:8000/viewcvs/*checkout*/$page?content-type=text/vnd.viewcvs-markup Biowiki CVS repository file '$page'

Bio-related interwiki links

Alias: URL: Tooltip Text: Name service (optional):
XP http://www.xpdeveloper.com/xpdwiki/Wiki.jsp?page=$page xpdeveloper.com wiki
YaleCGI http://twiki.med.yale.edu/twiki2/bin/view/CGIapp/$page '$page' on Yale CGI wiki
BKB http://apps.bioneq.qc.ca/twiki/bin/view/Knowledgebase/$page Bioinformatics Knowledge Base entry for $page
AAA http://rana.lbl.gov/drosophila/wiki/index.php/$page Fruitfly AAA (assembly/alignment/annotation) page $page $page (AAA wiki)
AAAtalk http://rana.lbl.gov/drosophila/wiki/index.php/Talk:$page Fruitfly AAA (assembly/alignment/annotation) discussion for page $page
BioPerl http://www.bioperl.org/wiki/$page BioPerl wiki page $page
MathWorld http://mathworld.wolfram.com/$page.html '$page' on 'MathWorld'
MLpedia http://www.mlpedia.org/index.php?title=$page '$page' on 'MLpedia'
NCBO http://bioontology.org/wiki/index.php/$page '$page' on Bioontology wiki
Genbank http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=$page GENBANK entry $page
EMBL http://www.ebi.ac.uk/cgi-bin/dbfetch?db=embl&style=html&id=$page EMBL entry $page
Swiss http://www.uniprot.org/uniprot/$page Uniprot/Swissprot entry $page
PDB http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=$page PDB structure $page
Spotlight http://www.expasy.org/spotlight/back_issues/sptlt$page.shtml Protein Spotlight $page archive at Expasy
MolMonth http://mgl.scripps.edu/people/goodsell/pdb/pdb$page PDB Molecule of the Month $page archive at Scripps
Rfam http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?$page RFAM family $page TWiki.RfamNames
Pfam http://pfam.sanger.ac.uk/family?acc=$page PFAM family $page TWiki.PfamNames
FBgn http://flybase.bio.indiana.edu/.bin/fbidq.html?FBgn$page Flybase gene $page
WormGene http://www.wormbase.org/db/gene/gene?name=$page;class=Gene Wormbase gene $page
GO http://www.godatabase.org/cgi-bin/amigo/go.cgi?view=details&search_constraint=terms&depth=0&query=GO:$page Gene ontology term $page
Phyloinformatics https://www.nescent.org/wg/phyloinformatics/index.php?title=$page NESCENT Phyloinformatics wiki page $page
Sourceforge http://$page.sourceforge.net/ $page.sourceforge.net
CPAN http://search.cpan.org/dist/$page CPAN documentation for $page
CPANBio http://search.cpan.org/~sendu/bioperl-1.5.2_102/Bio/$page CPAN documentation for Bio/$page
GMOD http://gmod.org/wiki/$page GMOD wiki page $page
OpenWetWare http://openwetware.org/wiki/$page openwetware.org wiki page $page

How to define Inter-Site links

  • Inter-Site links are defined in the tables below.
  • Each entry must be of format:
    | External site alias | URL | Tooltip help text |.
  • The URL and Tooltip Text may contain optional $page variables; the variable gets expanded to the page name.
  • The optional "Name service" column can contain:
    1. a page name of the form "Web.Topic", leading to a page on which there is a table mapping $page to link names;
    2. a URL involving $page, which will be called to get the link name;
    3. a simple text expression that (like the Tooltip) can use the $page variable (underscores will be replaced by spaces, solely to make Wikipedia links look nice);
    4. the default (if the column is empty) is Alias:$page
  • Note: The Tooltip Text must not contain any HTML tags (including <nop> escape code), no internal WikiWord links, and no external links. Hint: Escape 'WikiWords' and '$page'.

General Inter-Site Links

Alias: URL: Tooltip Text: Name service (optional):
Acronym http://www.acronymfinder.com/af-query.asp?Acronym=$page&String=exact Look up '$page' on Acronym Finder site
Dictionary http://www.dictionary.com/cgi-bin/dict.pl?term= Look up '$page' at Dictionary.com
Google http://google.com/search?q= Search for '$page' on Google
Group http://groups.google.com/groups?hl=en&safe=off&group= News group '$page' at Google.com
ISBN http://en.wikipedia.org/w/index.php?title=Special:Booksources&isbn=$page#Booksellers Wikipedia Booksources for ISBN#$page (One click patent? Say no to Amazon!)
RFC http://www.faqs.org/rfcs/rfc$page.html IETF RFC #$page
IMDB http://www.imdb.com/title/tt$page/ IMDB entry $page

Inter-Wiki Links

Alias: URL: Tooltip Text: Name service (optional):
Advogato http://www.advogato.org/ '$page' on Advogato community site (with peer review)
C2find http://c2.com/cgi/wiki?FindPage&value= Search '$page' on the original 'WikiWikiWeb' site
DolphinWiki http://www.object-arts.co.uk/wiki/html/Dolphin/$page.htm '$page' on Dolphin Wiki site
FoxWiki http://fox.wikis.com/wc.dll?Wiki~ '$page' on Fox Wiki site
HammondWiki http://www.dairiki.org/HammondWiki/index.php3? '$page' on 'HammondWiki' site
LegoWiki http://www.object-arts.com/wiki/html/Lego-Robotics/ '$page' on 'LegoWiki' site
MbTest http://www.usemod.com/cgi-bin/mbtest.pl? '$page' on 'UseMod' Wiki variant
MeatBall http://www.usemod.com/cgi-bin/mb.pl? '$page' on 'MeatBall' site, a 'UseMod' Wiki variant
MoinMoin http://moin.sourceforge.net/cgi-bin/moin/moin/ '$page' on 'MoinMoin' Wiki site
MuWeb http://www.dunstable.com/scripts/MuWebWeb? '$page' on 'MuWeb' site
OrgPatterns http://www.easycomp.org/cgi-bin/OrgPatterns? '$page' on Organizational Patterns site
PhpWiki http://phpwiki.sourceforge.net/phpwiki/index.php3? '$page' on Wiki site written in PHP
PolitizenWiki http://www.politizen.com/wiki.asp? '$page' on 'PolitizenWiki' site
PPR http://c2.com/cgi/wiki? '$page' on the original 'PortlandPatternRepository' site
PyWiki http://www.voght.com/cgi-bin/pywiki? '$page' on Wiki site written in Python
Squeak http://minnow.cc.gatech.edu/squeak/ '$page' on Squeak Smalltalk Wiki
TWiki http://twiki.org/cgi-bin/view/ '$page' on TWiki.org
DecafBad http://www.decafbad.com/twiki/bin/view/Main/ '$page' on 0xDECAFBAD
UseMod http://www.usemod.com/cgi-bin/wiki.pl? '$page' on 'UseMod' Wiki site
VisualWorks http://wiki.cs.uiuc.edu/VisualWorks/ '$page' on 'VisualWorks' site
Wiki http://c2.com/cgi/wiki? '$page' on the original 'WikiWikiWeb' site
Wikipedia http://en.wikipedia.org/wiki/$page '$page' on 'Wikipedia' $page (Wikipedia)
ZWiki http://joyful.com/zwiki/ '$page' on Zope's Wiki

Access Control Settings

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Topic revision: r118 - 2012-01-10 - IanHolmes

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