Home - this site is powered by TWiki(R)
Main > FreeSoftware
TWiki webs: Main | TWiki | Sandbox   Log In or Register

Users | Groups | Changes | Index | Search | Go

Free Software

Free software for computational biology.

Sequence analysis software projects hosted on this site

Biowiki is the primary documentation site for the following software...


Probabilistic sequence modeling

Format conversion

  • Perl scripts for bouncing around various flatfile formats:
    • GffTools (GFF format: genome features)
    • StockholmTools (Stockholm format: annotated multiple alignment databases)

Other recommended bioinformatics software

Here are some software tools I use frequently (IanHolmes 10/3/06)

Sequence alignment & homology search

Likelihood phylogeny

RNA structure

Collaborative media software


All software developed in the Holmes lab is released under an open source license.

Except where another license is explicitly specified, this should be taken to be the GNU Public License.

Edit | Attach | Print version | History: r146 < r145 < r144 < r143 < r142 | Backlinks | Raw View | Raw edit | More topic actions

Parents: WebHome
This site is powered by the TWiki collaboration platformCopyright © 2008-2014 by the contributing authors. All material on this collaboration platform is the property of the contributing authors.
Ideas, requests, problems regarding TWiki? Send feedback
TWiki Appliance - Powered by TurnKey Linux