Free Software

Free software for computational biology.



Sequence analysis software projects hosted on this site

Biowiki is the primary documentation site for the following software...

Visualization

Probabilistic sequence modeling

Format conversion

  • Perl scripts for bouncing around various flatfile formats:
    • GffTools (GFF format: genome features)
    • StockholmTools (Stockholm format: annotated multiple alignment databases)

Other recommended bioinformatics software

Here are some software tools I use frequently (IanHolmes 10/3/06)

Sequence alignment & homology search

Likelihood phylogeny

RNA structure

Collaborative media software

License

All software developed in the Holmes lab is released under an open source license.

Except where another license is explicitly specified, this should be taken to be the GNU Public License.

Topic revision: r146 - 2011-11-03 - IanHolmes
 

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