Databases on the BabylonCluster

List of databases installed on the HolmesLab cluster NFS.

• Databases on the BabylonCluster
• In /nfs/data/db
  • Balibase
  • Bralibase
    • Bralibase I
    • Bralibase II
  • PFAM
  • RFAM
  • Homstrad
  • OPTIC
  • Pandit
  • Panther
  • Treefam

In /nfs/data/db

Balibase

• See BaliBase
• Version 3.0

Bralibase

• http://projects.binf.ku.dk/pgardner/bralibase/ (broken)

Bralibase I

• Version 2.1

Bralibase II

PFAM

• See PfamDatabase
• Release 21.0

RFAM

• See RfamDatabase
• Release 8.1

Homstrad

• See HomstradDatabase
• Release @ July 1, 2005
• Convert to Stockholm with DartPerl:homstrad2stockholm.pl

OPTIC

• See OpticDatabase
• Snapshot @ September 8, 2010
• Convert to Stockholm with DartPerl:optic2stockholm.pl

Pandit

• See PanditDatabase
• Version 17
• Convert to Stockholm with DartPerl:pandit2stockholm.pl

Panther

• See PantherDatabase
• Version 7.0

Treefam

• See TreeFam
• Version 5.0