-- %TEACHINGWEB%.TaiNg - 09 Oct 2011
My parameter File is structured like this:
(number of A)
(number of T)
(number of C)
(number of G)
(motif you can add in (extra credit))
don't start the file with a blank line.
don't add any extra line between each line (no blank lines, don't press enter after each entry)
the idea behind my random generator is to create an array of nonrepeating number with length of the sequence.
STEP ONE: generate random number (i.e. 1 3 7 5 4). the original indicies are 0,1,2,3,4
STEP TWO: sort the random number (i.e. 1 3 4 5 7). The original indicies are now 0,1,4,3,2
so my original indicies are now scrambled, and I evaluate my unscrambled dna sequence with those nonrepeating, random numbers!
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