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-- %TEACHINGWEB%.TaiNg - 09 Oct 2011 My parameter File is structured like this:

(number of A)

(number of T)

(number of C)

(number of G)

(total number)

(motif you can add in (extra credit))

don't start the file with a blank line. don't add any extra line between each line (no blank lines, don't press enter after each entry)

*Note

the idea behind my random generator is to create an array of nonrepeating number with length of the sequence.

STEP ONE: generate random number (i.e. 1 3 7 5 4). the original indicies are 0,1,2,3,4

STEP TWO: sort the random number (i.e. 1 3 4 5 7). The original indicies are now 0,1,4,3,2

so my original indicies are now scrambled, and I evaluate my unscrambled dna sequence with those nonrepeating, random numbers!

I	Attachment	Action	Size	Date	Who	Comment
EXT	parameterfile	manage	0.1 K	2011-10-09 - 04:43	TaiNg	SAMPLE PARAMETER FILE
txt	simulator.pl.txt	manage	15.3 K	2011-10-09 - 04:42	TaiNg