Fall11 > BioE131 > GavinSaldanha

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Basic Information

Gavin Saldanha
gavin.saldanha@berkeley.edu

I am a second year computer science undergraduate. I first became interested in biology in my high school AP Biology class, especially molecular biology. As computers have become more prominent in solving bioengineering problems, I have become increasingly interested in the bioengineering field. I am taking BioE131 as an introduction to the field and because it combines bioengineering and computer science.

Outside of school, I play several sports, including volleyball and basketball. I also play the piano.

Basics of Wiki

GavinSaldanhaHW1

Reverse Complementing a FASTA File

• rev_comp_fasta.pl.txt: Code for HW2

DNA Sequence Simulator

• simulator.pl.txt: Code for HW3

RNA Logic

GavinSaldanhaHW4

Nussinov Algorithm

• hw5.pl.txt: Nussinov Algorithm Code

Pairwise Alignment

• alignment.pl.txt: Pairwise alignment code

Information Content

• infocontent.pl.txt: Code for HW5

• infocontent.txt: analysis of results

Bayesian Inference

• hw6a.pl.txt: Code for HW6a

• hw6b.pl.txt: Code for HW6b

Phylogenetic Trees

• hw7.pl.txt: Code for HW7

• hw7.txt: Comparison of UPGMA and weighbor

Final Project

• final.tar.gz: final project

I	Attachment	Action	Size	Date	Who	Comment
txt	alignment.pl.txt	manage	2.2 K	2011-12-08 - 05:21	GavinSaldanha	Pairwise alignment code
gz	final.tar.gz	manage	5.3 K	2011-12-15 - 15:44	GavinSaldanha	final project
txt	hw5.pl.txt	manage	1.3 K	2011-12-08 - 05:35	GavinSaldanha	Nussinov Algorithm Code
txt	hw6a.pl.txt	manage	3.6 K	2011-11-30 - 06:33	GavinSaldanha	Code for HW6a
txt	hw6b.pl.txt	manage	1.8 K	2011-11-30 - 06:33	GavinSaldanha	Code for HW6b
txt	hw7.pl.txt	manage	1.4 K	2011-12-06 - 02:02	GavinSaldanha	Code for HW7
txt	hw7.txt	manage	1.0 K	2011-12-08 - 05:21	GavinSaldanha	Comparison of UPGMA and weighbor
txt	infocontent.pl.txt	manage	3.7 K	2011-12-08 - 05:22	GavinSaldanha	Code for HW5
txt	infocontent.txt	manage	0.9 K	2011-12-08 - 05:48	GavinSaldanha	analysis of results
png	nussinovanal.png	manage	40.7 K	2011-12-08 - 20:37	GavinSaldanha	Analysis of Nussinov
txt	rev_comp_fasta.pl.txt	manage	0.8 K	2011-09-25 - 04:10	GavinSaldanha	Code for HW2
jpg	scan0001.jpg	manage	36.4 K	2011-09-09 - 21:35	GavinSaldanha
txt	simulator.pl.txt	manage	4.8 K	2011-10-12 - 02:07	GavinSaldanha	Code for HW3

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