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$ Name: Steffen Noevik $ Email: steffeno #64;berkeley.edu I am a student from Norway currently in Berkeley through the concurrent enrolment program. ...
Stephen C. Wilson scwilson #64;gmail.com Hey there! Welcome to my Biowiki page! Bio I grew up in a small suburb outside of Boston, MA. In 2005, I graduated from ...
.AleoMok Dec 4 2010 Return to Aleo Mok's Page: AleoMok Homework 07 (Collaborated with James Pollard and Brian Ng) File Available Here hw8.pl.txt (diffusion code ...
.AchutaKadambi 04 Dec 2010 I worked with Nathan Kane on this. Attached is a program that will print to stdout, the tree in Newick format. Unfortunately, we're pretty ...
.SabaKhalilnaji 04 Dec 2010 Diffusion limited aggregation homework There is no need to include .png when specifying the output filename Simple: hw8 simple ...
Phylo Game Review Thoughts: Overall, I really like the game (though I did not play, I read through the rules and browsed all of the cards present in class). I think ...
.StephenWilson 16 Oct 2010 Homework #4 Hammerhead Ribozyme YES gate A) Off state Command line (MFE structure) be231 09@kepler RNAfold Input string (upper ...
Name: Aaron Welch Email: aaronzwelch #64;gmail.com Interests: Ultimate frisbee, S. cerevisiae (yeast) Aaron Welch: RICIN This is a ...
.JessieLee 13 Nov 2010 Homework 8: Bayesian Inference Part A: Open Reading Frames This program takes a FASTA file (single or multiple sequences) as the lone command ...
.NathanKane 13 Nov 2010 I worked with Achuta Kadambi for both the Bayesian Inference and the Information Content homework. The information content Perl program is ...
.JessieLee 13 Nov 2010 Homework 7: Information Content Multiple Alignment Can Tell You A Lot! This program reads the alignment of multiple sequences in Stockholm ...
.ArchanaRamesh 13 Nov 2010 Information Content: infocontent.txt:
.AchutaKadambi 13 Nov 2010 I worked with Nathan Kane for both the Bayesian Inference and the Information Content HWK. The two Bayesian Inference scripts are attached ...
Set GROUP HubertusBigend SteffenNoevik NathanKane AaronWelch NicholasAkers YuanFangFu JonasRibe JustinWang MonicaLin KeithLicardo JohnKwon SeanMcFarland MajidSoleimani ...
Bayesian Homework Part 1 see bayes1.pl Comments on the log ratio can be found as comments in the bayes1.pl script. Part 2 see bayes2.pl Though we weren't told ...
BioE 131: Introduction to Computational Biology I was born in the Philippines but lived in California since 2000 and have lived in the east bay for 10 years. I ...
Pairwise Alignment HW Partner : Amer Abdullah Grading : SCHEME 1 The Pairewise Alignment Script The following script is called "pairwise.pl". The commandline ...
.AmerAbdulla 06 Nov 2010 I would like to be graded by the first grading scheme. I worked on this project with Keith Licardo. pairwise.pl.txt:
.SteffenNoevik 06 Nov 2010 PairwiseAlignment I would like to have this graded by the criterias in Scheme 1. The program should have no problem beating the minimum ...
.JamesPollard 06 Nov 2010 Return to James Pollard's Page: JamesPollard Homework 06 I worked with Aleo Mok Code JamesPollardHomework6.txt:
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.guest 23 Oct 2010 The code for the Nussinov algorithm is as follows: #!/usr/local/bin/perl use List::Util qw(max); #Allows use of ...
.JustinWang 23 Oct Data Set 8 .015 16 .02 32 .026 64 .059 128 .267 256 1.757 512 13.743 analysis The graph grows very fast relative to the sequence length ...
.ChrisTandiono 23 Oct 2010 octave 3.0.1:19 x x 2 4 6 8 10 12 14 16 18 octave 3.0.1:20 y y Columns 1 through 6: 1.0000e 02 9.0000e ...
.StephenWilson 06 Sep 2010 Homework #1 Ricin !!(Ricin) Ricin is a lethal protein found in castor beans. Its low LD50 (~ 22 ug/kg) and widespread availability ...
.guest 23 Oct 2010 Return to James Pollard's Page: JamesPollard Homework 05 I worked with Aleo Mok File Available Here hw5.pl.txt Code #! /usr/bin/perl w ...
.NathanKane 23 Oct 2010 My Nussinov file is attached, along with the .xls file with the plotted runtimes. The runtime seems to correlate exponentially with the number ...
Nussinov Algorithm Program Q:How well does this work? A: Using randomly generated sequences, nussi2.pl has been tested up to 1024 nucleotides, getting the correct ...
Sean McFarland: Homework 4 (RNA Folding) Part 1 Hammerhead Ribozyme YES Gate OFF Position To generate the folding and base pairing images displayed below, I ...
.JustinWang 15 Oct 2010 RNA Folding Assignment Table of Contents Part 1 Predicted structure in OFF position.......Predicted base pairing in Off position ...
.NathanKane 15 Oct 2010 Part I Procedures I followed for ON state: used RNAfold command from terminal pasted in sequence from Penchovsky paper used RNAplot, ...
.JustinWang 09 Oct 2010
.guest 09 Oct 2010 Four types of cis acting signal sequences: 1. TATA Box 2. IRES is an internal ribosomal entry site 3. STRE is a stress element ...
Please find my homework assignment attached. Amer .AmerAbdulla 25 Sep 2010
.JamesPollard 09 Sep 2010 Homework 1 Ricin Ricin (pronounced / #712;ra #618;s #616;n/) is a protein that is extracted from the castor bean (Ricinus communis). Ricin ...
.JustinWang 24 Sep 2010 Here is the attachment for my second homework assignment
Sean McFarland: Homework 2 (Perl Basics) Introductory Thoughts / Comments So I am guessing it is because I developed the program in a Cygwin environment on Windows ...
.AleoMok 22 Sep 2010 Return to Aleo Mok's Page: AleoMok Homework 02 File Available Here hw2.pl.txt Code #! /usr/bin/perl w # check if there is the correct ...
Sean McFarland: Homework 1 Ricin Ricin is an interesting compound that I first learned of in BioE 131 lecture. Historically it has gained some infamy for its usage ...
Homework 1 Table of Contents Ricin Wikipedia:Ricin is extracted from the castor bean and its toxicity depends on route of exposure. Its toxicity is due to its inhibition ...
All about Ricin Wikipedia:Ricin is a protein that is extracted from the castor bean. It can be made from the waste material resulting from processed castor bean. Ricin ...
.BrianNg 31 Aug 2010 YAAAAAYYYYY!!! did this actually work?!?!? test
Group of users and groups authorized to add URLs to wiki pages Set GROUP StudentGroup TWikiAdminGroup HolmesLabGroup HolmesLabAlumniGroup HolmesLabFriendsGroup ...
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