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Selected Transposon Papers

TransposonAnnotation

Transposon detection and clustering algorithms

  • Bejerano G, Haussler D, Blanchette M.  Into the heart of darkness: large-scale clustering of human non-coding DNA.  Bioinformatics. 2004 Aug 4;20 Suppl 1:i40-8.
    • Start with a graph whose nodes are all putative transposons & edges correspond to BLAST matches
    • Apply the following heuristic to break up this graph:
      • Split any node whose set of neighbors can be partitioned into two dissimilar subsets
      • Iterate, reducing graph to a set of densely-connected subgraphs

Repeats, copy languages and computational linguistics

TransposonEvolution

Transposons and their hosts

Transposons catalyzing evolution

Transposon Phylogeny

TransposonPopulationGenetics

Transposon population dynamics

This section is clearly in dire need of some extra entries........ please feel free to add something... anything.... all you need is the pubmed ID... IanHolmes, 26 Feb 06

FruitflyTransposons

Transposons in Drosophila

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