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The "Sum-of-Pairs Score" is an accuracy metric for a multiple alignment relative to a reference alignment,
based on the number of correctly aligned residue pairs
summed over all pairs of sequences.
The accuracy metric can equivalently be viewed as a similarity metric between two multiple alignments.
This metric was used by the Bali Base benchmark.
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| Main.SumOfPairsScore r1.4 - 22 May 2007 - 11:30 - IanHolmes | Biowiki content is in the public domain. Comments on this site? Send feedback |