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Biowiki . Main . RNAAlignmentViewers

Biowiki . Main . RNAAlignmentViewers

RNA Alignment Viewers

This page gives details of how to access three RNA alignment viewer tools described in the following paper

The three tools use three different rendering technologies (ANSI terminal color, static HTML generation & javascript) to address the same visualization task (colorizing RNA multiple alignments by secondary structure and highlighting compensatory mutations).

Input format

All three tools require the input alignments to be in Stockholm format.

Example alignment files

Here are a few examples of Stockholm-format alignment files to get you started:

All of these examples are from RFAM. You can find many more alignments there.

Tools

Colorstock

Colorstock screenshot:
colorstock.png


SScolor and SScolorMult

SScolor screenshot:
sscolor.png


Raton

Raton screenshot:
raton.png


Related Links

-- IanHolmes - 23 Oct 2007


----- Revision r48 - 2008-02-29 - 02:40:48 - IanHolmes
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