Holmes Lab

• Address: 381 Stanley Hall, University of California, Berkeley, CA 94720-3220.
• Phone: (510) 666 - 2791.

We have a regular Lab Meeting which is more of a reading group, as well as individual Project Meetings (during the fall, project meetings are rolled into the lab meeting).

Group members

• Holmes Lab Members
  • Undergrad rotations: Robert Wu
  • Graduate students: RobertBradley, AvinashVaradarajan
  • Specialists: LarsBarquist, OscarWestesson
  • Programmers: MitchSkinner
  • PI: IanHolmes

Past members

• Past members
  • Grad students: SharonChao, YuriBendana
  • Undergrad students: KennyDuong, SamanManesh, PatrickCharoenpong, GabrielWu
  • Specialists: AndrewUzilov, PeteKlosterman
  • Programmers: JeremyLemieux
  • GSIs: VictorChubukov, AngiChau, YuriBendana, JoshKittleson

Collaborators

• Collaborators/colleagues

  Free software	ChrisMungall, LincolnStein, StephenCarrier, JasonStajich, GuySlater, MarcinJoachimiak, EwanBirney
  Statistical alignment	IstvanMiklos, GertonLunter, JohnHuelsenbeck, RasmusNielsen, MarcSuchard, JotunHein
  Multiple RNA alignment	SeanEddy, AlexCoventry, SamGriffithsJones, AlexBateman
  Drosophila annotation	LiorPachter, MikeEisen, SueCelniker, SuziLewis
  RNA structural evolution	StevenBrenner, SteveHolbrook
  Protein structure evolution	KimmenSjolander, BillBruno
  Codon evolution	NickGoldman, CarolinKosiol, RichardGoldstein
  Transposons	CedricFeschotte, RichardDurbin
  Comparative genomics	CalebWebber, ChrisPonting, AndreasHeger
  Visualization/AJAX	LincolnStein, ToddVision, SteveTaylor, MarcinJoachimiak

Info for UC Berkeley students

If you are a UC Berkeley undergrad or graduate student, and are interested in doing a rotation with our group to develop algorithms for computational evolutionary genomics and RNA/protein design, contact IanHolmes (see also this page: HolmesLabGraduateProjects).