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| Chado is a relational database schema covering a variety of biological domains.
Chado is modular -- it consists of seperate interlocking modules with well-specified dependencies. Current modules include:
- cv (%ontologies%)
- sequence (Bio Sequence? and Sequence Feature? data)
- genetic (genetic and phenotypic data)
- expression (expression of gene products such as RNA and protein in time and space)
Chado is a kind of Generic Schema. It uses a relatively small number of table representing basic biological concepts on an abstract level, and relies heavily on %ontologies% (aka cv/ControlledVocabularies) to allow modeling of specific subtypes of this data. The Sequence Ontology is particularly important for Chado.
The main Chado designers are David Emmert? and Chris Mungall. A number of other people have contributed significantly to the design, including (in no particular order): Stan Letovsky? Richard Bruskiewitz? Pinglei Zho? Shenquiang Shu? Colin Wiel? Suzanna Lewis Aubrey De Grey?
-- ChrisMungall - 27 Feb 2005 |