Useful Links

This is mostly an attempt to keep track of BioWiki stuff to which I contributed.

Also see: silly notes to self.

TODOs

• Fix Andrew Uzilov Topic Map (see Directed Graph Web Map Plugin for info)
• Put a "comments" section in every page below, in case someone stumbles on it and wants to add a note, but is afraid to use the wiki edit function.

Lab Business

• Lab Meeting
• Journal Club (on hiatus)
• Folding At Home (go Team Holmes!)

Document/HOWTOs for Others (not related to system administration)

• How To Use Sun Grid Engine
  • presentable, but always up for a change
• Dart Perl Scripts
  • should be getting filled out as time goes by
• Installed Software
  • software installed on the cluster (waaaay out of date, needs to be revisited)

System Administration

• Backups Using Rsync
  • todo: add passwordless SSH section, really minor
• CentOS
  • placeholder for notes on CentOS... IN PROGRESS
• Cluster NFS
  • installation section could be refined
  • tcpwrappers security settings aren't what they wound up being in the end
• Cluster NFS Benchmarks
• Cluster RAID
  • IN PROGRESS, barely started
• CPAN Notes
• How To Configure VPN
  • IN PROGRESS
• How To Administer Sun Grid Engine
  • presentable, but always up for a change
• How To Update Cluster SSH
• Installing CentOS On Cluster
  • almost done, just need to add instructions on how to optimise NFS
• Installing CentOS On Cluster Via NFS
• KVM over IP
  • NEEDS TO BE WRITTEN
• Lab Backups
• Linux Gateway And Router
  • need to rewrite slightly, esp. add things to Step 2
• Mounting NFS Through SSH Tunnel
  • complete, but the 1-vs-2-tunnels section needs to be re-evaluated and adjusted, now that I have a clue as to how this works (TODO: do this soon!)
• Babylon Cluster
  • this has become a dumping ground for cluster technical issues and other misc.
• Sun Grid Engine
  • would be nice to re-read this thing for coherence/correctness when I have time
• Sun Grid Engine To Do
  • a "to do" list for SGE stuff, and therefore always in progress
• TSM Backup System
  • more or less complete, except for a minor "todo" list... one of these days...

AJAX GBrowse

• AJAX GBrowse headquarters
  • go there for all the project-related links
• BioPerl
• MySQL

Research

• Twelve Fly Screen
• Non Coding RNA Datasets
  • my write-up of how to train/benchmark/fine-tune ncRNA genome screens (TODO: finish it!)
• Fly Nc Rna
• Rna Screen Resources
• Rna Structure Prediction Resources

-- Created by: AndrewUzilov on 10 Jan 2007